parse_nm_control_stream: Parse a NONMEM control stream

In pnolain/pmxploit: Pharmacometric tools for post-processing of mixed-effects models for continuous data

Parse a NONMEM control stream

Description

Reads the content of a control stream and extracts informations related to input data, model, estimation and output.

Usage

parse_nm_control_stream(
  filepath = NULL,
  content = NULL,
  read_initial_values = TRUE,
  verbose = FALSE
)

Arguments

filepath	character. If content = NULL, defines the filepath of the control stream file.
content	character. Text content of a control stream file.
read_initial_values	logical. If TRUE (default), parses initial parameter values from the control stream.
verbose	logical. If TRUE: prints output messages.

Value

A list representing a NONMEM control stream.

Object structure:

• content: control stream lines.

• problem: problem description.

• ignore: list with:

  • C: logical. TRUE if IGNORE=C

  • @: logical. TRUE if IGNORE=@

  • #: logical. TRUE if IGNORE=#

  • data: data frame containing other IGNORE options.

• ignore_at: logical, indicating if if IGNORE=@ is specified.

• dataset_file: dataset file name.

• subroutine: NONMEM ADVAN subroutine.

• model_compartments: tibble of the compartments (name and number of each).

• subpopulations: number of subpopulations (for mixture models).

• input: tibble of dataset input columns (name, is dropped?, has a synonymn/alias?).

• parameters_definitions: tibble of the model parameters (THETAs and ETAs).

• estimations: successive estimation methods.

• tables: output tables with columns definitions.

Examples

## Not run: 
parse_nm_control_stream(filepath = "run_control_stream.con")

## End(Not run)

pnolain/pmxploit documentation built on Jan. 31, 2024, 1:16 p.m.