Files in pnolain/pmxploit

Pharmacometric tools for post-processing of mixed-effects models for continuous data

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE.md

NAMESPACE

NEWS.md R/cleanup.R R/compare_runs.R R/control_stream_utils.R R/data.R R/detect_outliers.R R/load_nm_run.R R/load_nm_run_utils.R R/nm_check.R R/nm_exec.R R/nm_exec2.R R/nm_prior.R R/nm_simulation.R R/parse_nm_control_stream.R R/parse_nm_control_stream_utils.R R/parse_nm_ext.R R/parse_nm_phi.R R/plot_categorical_covariates_distributions.R R/plot_continuous_covariates_distributions.R R/plot_convergence.R R/plot_covariates_correlations.R R/plot_dv_vs_predictions.R R/plot_individual_ofv.R R/plot_individual_profiles.R R/plot_observed_profiles.R R/plot_ofv.R R/plot_parameters_correlations.R R/plot_parameters_distributions.R R/plot_parameters_vs_categorical_covariates.R R/plot_parameters_vs_continuous_covariates.R R/plot_residuals.R R/quality_criteria.R R/s3_methods.R R/summarize_categorical_covariates.R R/summarize_continuous_covariates.R R/summarize_covariates_correlations.R R/summarize_parameters_correlations.R R/summarize_parameters_distributions.R R/summarize_parameters_vs_continuous_covariates.R R/summarize_population.R

R/sysdata.rda

R/themes.R R/utils.R R/zzz.R README.Rmd README.md TODO.md

_pkgdown.yml

data-raw/TMDD_Djebli_al/TMDD_Djebli_al.coi

data-raw/TMDD_Djebli_al/TMDD_Djebli_al.cor

data-raw/TMDD_Djebli_al/TMDD_Djebli_al.cov

data-raw/TMDD_Djebli_al/TMDD_Djebli_al.cpu

data-raw/TMDD_Djebli_al/TMDD_Djebli_al.ctl

data-raw/TMDD_Djebli_al/TMDD_Djebli_al.ext

data-raw/TMDD_Djebli_al/TMDD_Djebli_al.grd

data-raw/TMDD_Djebli_al/TMDD_Djebli_al.lst

data-raw/TMDD_Djebli_al/TMDD_Djebli_al.phi

data-raw/TMDD_Djebli_al/TMDD_Djebli_al.shk

data-raw/TMDD_Djebli_al/TMDD_Djebli_al.shm

data-raw/TMDD_Djebli_al/TMDD_Djebli_al.xml

data-raw/TMDD_Djebli_al/catab

data-raw/TMDD_Djebli_al/cotab

data-raw/TMDD_Djebli_al/dataset.csv

data-raw/TMDD_Djebli_al/patab

data-raw/TMDD_Djebli_al/sdtab

data-raw/nonmem_raw_data.R

data-raw/nonmem_txtmsgs.csv

docs/LICENSE.html

docs/TODO.html

docs/articles/index.html

docs/articles/nonmem_requirements.html

docs/articles/pmxploit.html

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docs/reference/nm_simulation.html

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docs/reference/quality_criteria.html

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docs/reference/slice.nonmem_run.html

docs/reference/summarize_categorical_covariates.html

docs/reference/summarize_continuous_covariates.html

docs/reference/summarize_covariates_correlations.html

docs/reference/summarize_etabars.html

docs/reference/summarize_omega.html

docs/reference/summarize_parameters_correlations.html

docs/reference/summarize_parameters_distributions.html

docs/reference/summarize_parameters_vs_continuous_covariates.html

docs/reference/summarize_shrinkage.html

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docs/reference/summarize_thetas.html

docs/reference/summary.nonmem_control_stream.html

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docs/reference/ungroup.nonmem_run.html

docs/sanofi.svg

man/EXAMPLERUN.Rd man/compare_runs.Rd man/detect_outliers.Rd

man/figures/convergence-1.png

man/figures/dv_vs_pred-1.png

man/figures/residuals-1.png

man/figures/residuals2-1.png

man/filter.nonmem_run.Rd man/get_estimation.Rd man/group_by.nonmem_run.Rd man/load_nm_run.Rd man/load_nm_run_directory.Rd man/nm_check.Rd man/nm_exec.Rd man/nm_exec2.Rd man/nm_prior.Rd man/nm_reserved_names.Rd man/nm_simulation.Rd man/nonmem_txtmsgs.Rd man/parse_nm_control_stream.Rd man/parse_nm_ext.Rd man/parse_nm_phi.Rd man/plot_categorical_covariates_distributions.Rd man/plot_continuous_covariates_distributions.Rd man/plot_convergence.Rd man/plot_covariates_correlations.Rd man/plot_dv_vs_predictions.Rd man/plot_individual_ofv.Rd man/plot_individual_profiles.Rd man/plot_observed_profiles.Rd man/plot_ofv.Rd man/plot_parameters_correlations.Rd man/plot_parameters_distributions.Rd man/plot_parameters_vs_categorical_covariates.Rd man/plot_parameters_vs_continuous_covariates.Rd man/plot_residuals.Rd man/print.nonmem_control_stream.Rd man/print.nonmem_run.Rd man/quality_criteria.Rd man/recode_categorical_covariates.Rd man/reexports.Rd man/rename_compartments.Rd man/rename_covariates.Rd man/set_compartments_units.Rd man/slice.nonmem_run.Rd man/summarize_categorical_covariates.Rd man/summarize_continuous_covariates.Rd man/summarize_covariates_correlations.Rd man/summarize_etabars.Rd man/summarize_omega.Rd man/summarize_parameters_correlations.Rd man/summarize_parameters_distributions.Rd man/summarize_parameters_vs_continuous_covariates.Rd man/summarize_shrinkage.Rd man/summarize_sigma.Rd man/summarize_thetas.Rd man/summary.nonmem_control_stream.Rd man/switch_covariates_type.Rd man/theme_pmx.Rd man/ungroup.nonmem_run.Rd

pkgdown/extra.css

pkgdown/pmxploit.svg

pmxploit.Rproj

tests/testthat.R tests/testthat/test-examplerun.R vignettes/nonmem_requirements.Rmd vignettes/pmxploit.Rmd

pnolain/pmxploit documentation built on Jan. 31, 2024, 1:16 p.m.