Description Usage Arguments Value See Also
Function to extract sequences and build feature matrices
1 2 | build.train.test.data(pos.regions, neg.regions, dictionary.file, org = "hg19",
select.top.features = TRUE, ...)
|
pos.regions |
Genomic Ranges object representing positive class regions |
neg.regions |
Genomic Ranges object representing negative class regions |
dictionary.file |
Dictionary file for the kernel build using |
org |
Name of the organism. Default is hg19. This assumes that the corresponding BSGenome library is installed |
select.top.features |
Logical indicating whether feature selection should be performed |
... |
Additional arugments to |
List containging feature matrix, labels and indexes for both train and test.
Matrix of positions indicating the position in the sequence with maximum kmer score.
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