group.motifs: Function for finding motifs associate with each group

Description Usage Arguments Details Value

Description

Function for finding motifs associate with each group

Usage

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group.motifs(res.dir, dictionary.file, no.cores = 1, min.examples = 25,
  test.classes = c(1, -1), org = "hg19")

Arguments

res.dir

Directory with group lasso results

dictionary.file

Dictionary file for the kernel build using ChIPKernels

no.cores

Number of cores for parallel processing

min.examples

Minimum examples for a group to be considered

test.classes

Group classes to be considered

org

Organism from which data was derived

Details

The motifs for all groups will be found under folder group_motifs. The summary of all groups and motifs will be written to group_motifs.html

Value

GRanges object of enriched regions


pranithavangala/SeqGL_pv documentation built on May 25, 2019, 11:25 a.m.