extract.high.scoring.locations: Function to extract high scoring regions for a particular...

Description Usage Arguments Value

Description

Function to extract high scoring regions for a particular group

Usage

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extract.high.scoring.locations(test.group, test.class, seqs, regions,
  group.model, dictionary.file, bed.file = NULL, half.binding.width = 25)

Arguments

test.group

Group to be tested

test.class

Class of the group being tested

seqs

Sequences of examples belonging to group

regions

Genomic location of examples belonging to group

group.model

Logistic regression model for the particular group

dictionary.file

Dictionary file for the kernel build using ChIPKernels

bed.file

Bed file for writing extracted regions

half.binding.width

Half of the enriched region size

Value

GRanges object of enriched regions


pranithavangala/SeqGL_pv documentation built on May 25, 2019, 11:25 a.m.