run.group.lasso: Run group lasso for peaks

In pranithavangala/SeqGL_pv: Group lasso for Dnase/ChIP-seq data

Description

Using the spams toolbox to run group lasso at regularization parameters selected using group.lasso.eval.parameters

Usage

run.group.lasso(train.features, train.labels, test.features, test.labels,
  groups, lambda1, lambda2, no.cores = 1)

Arguments

train.features	Training feature matrix
train.labels	Training labels (Should be +1/-1)
test.features	Test feature matrix
test.labels	Test labels (Should be +1/-1)
groups	Feature assignment to groups. Each feature should belong to exactly one cluster.
lambda2	L2 regularization parameter
no.cores	Number of cores for parallel processing
lambad1	L1 regularization parameter

Value

List of results containing w, test.preds, aucs

See Also

run.group.lasso

pranithavangala/SeqGL_pv documentation built on May 25, 2019, 11:25 a.m.