get.seqs: Get sequences for genomic reanges
In pranithavangala/SeqGL_pv: Group lasso for Dnase/ChIP-seq data
Description
Usage
Arguments
Value
Description
Get sequences for genomic reanges
Usage
1
get.seqs(org, regions, no.cores = 1)
Arguments
org
BSGenome object of the organism
regions
GenomicRanges object of the co ordinates
no.cores
Number of threads for parallel processing. Default 3
metadat.field
Metadata field name for naming sequences
fasta.file
Name of the fasta.file in which sequences need to written
Value
DNAStringSet object of sequences
pranithavangala/SeqGL_pv documentation built on May 25, 2019, 11:25 a.m.
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Description Usage Arguments Value
Description
Get sequences for genomic reanges
Usage
1 | get.seqs(org, regions, no.cores = 1)
|
Arguments
org |
BSGenome object of the organism |
regions |
GenomicRanges object of the co ordinates |
no.cores |
Number of threads for parallel processing. Default 3 |
metadat.field |
Metadata field name for naming sequences |
fasta.file |
Name of the fasta.file in which sequences need to written |
Value
DNAStringSet object of sequences
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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