protViz/bibliospec: Reading and Analyzing Mass Spectrometric Search Results

R class to access 'sqlite', 'BiblioSpec' generated, mass spectrometry search result files, containing detailed information about peptide spectra matches. Convert 'Mascot' '.dat' or e.g. 'comet' '.pep.xml' files with 'BiblioSpec' into 'sqlite' files and than access them with the 'CRAN' 'bibliospec' package, to analyse with the R-packages 'specL' to generate spectra libraries, 'protViz' to annotate spectra, or 'prozor' for false discovery rate estimation and protein inference. Bibliospec has functon to annotate the peaks in your spectra with ion series based on the psm amino acid sequence.

install.packages("remotes")
remotes::install_github("protViz/bibliospec")