Bibliospec_annotatePrecursors: annotate precursors

In protViz/bibliospec: Reading and Analyzing Mass Spectrometric Search Results

Description

annotate precursors

Value

table with annotated precursors

Examples

library(bibliospec)
library(prozor)

dbfile <- file.path(path.package("bibliospec"),
 "extdata/peptideStd.sqlite")

# call constructor
BS <- Bibliospec(dbfile=dbfile)
BS$annotateDB(fasta=file.path(path.package("bibliospec"),"extdata/uniprot.fasta.gz" ))
xx <- BS$annotatePrecursors()
head(xx)

protViz/bibliospec documentation built on May 26, 2019, 9:37 a.m.