Bibliospec_getSpectraMetaWithAnnotation: get spectra table annotated with razor proteins

In protViz/bibliospec: Reading and Analyzing Mass Spectrometric Search Results

Description

get spectra table annotated with razor proteins

Value

table with annotated peptide spectrum matches

Examples

library(prozor)
library(bibliospec)

dbfile <- file.path(path.package("bibliospec"),
 "extdata/peptideStd.sqlite")

# call constructor
BS <- Bibliospec(dbfile=dbfile)
BS$annotateDB(fasta=file.path(path.package("bibliospec"),"extdata/uniprot.fasta.gz" ))
specMet <- BS$getSpectraMetaWithAnnotation()

protViz/bibliospec documentation built on May 26, 2019, 9:37 a.m.