Annotate_isModification: compute which fragments carry modification
In protViz/bibliospec: Reading and Analyzing Mass Spectrometric Search Results
Description
Arguments
Examples
Description
compute which fragments carry modification
Arguments
psm
data.frame
modification
data.frame
Examples
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11
library(bibliospec)
rm(list=ls())
dbfile <- file.path(path.package("bibliospec"),
"extdata/peptideStd.sqlite")
# call constructor
BS <- Bibliospec(dbfile=dbfile)
tmp <- BS$getAnnotationLists()
ann <- Annotate()
ann$isModification(tmp$psml[[1]], tmp$modl[[1]])
protViz/bibliospec documentation built on May 26, 2019, 9:37 a.m.
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Description Arguments Examples
Description
compute which fragments carry modification
Arguments
psm |
data.frame |
modification |
data.frame |
Examples
1 2 3 4 5 6 7 8 9 10 11 | library(bibliospec)
rm(list=ls())
dbfile <- file.path(path.package("bibliospec"),
"extdata/peptideStd.sqlite")
# call constructor
BS <- Bibliospec(dbfile=dbfile)
tmp <- BS$getAnnotationLists()
ann <- Annotate()
ann$isModification(tmp$psml[[1]], tmp$modl[[1]])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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