Man pages for protViz/bibliospec
Reading and Analyzing Mass Spectrometric Search Results

aaMassesFuntest dummy
AminoAcidsData frame with amino acid masses
Annotate_annotateSpectrumannotate spectrum
Annotate-classA list with functions usefull for annotating peptide...
Annotate_isModificationcompute which fragments carry modification
applyRTCalibrationModelsApply Calibration models
Bibliospec_annotateDBAnnotate naked peptide seqeuences with protein IDs using...
Bibliospec_annotatePeaksWithFragmentsAnnotate the MS2 with fragment ion inforamtion, creates a new...
Bibliospec_annotatePrecursorsannotate precursors
Bibliospec-classR access to Bibliospec File
Bibliospec_getAnnotationListsget peptide anntotation list
Bibliospec_getScoreForPSMCompute FDR and add it to RefSpectra Table
Bibliospec_getSpectraMetaWithAnnotationget spectra table annotated with razor proteins
Blib-classBlib class for generating blib files from dat and other id...
CiRTpeptidesData frame with CiRTpeptides
getCalibrationModelsRTGet Calibration models for spectrum
getTOPhitFor each precursor select top PSM
iRTpeptidesData frame with iRTpeptides
protViz/bibliospec documentation built on Oct. 24, 2017, 2:23 p.m.