Man pages for protViz/bibliospec
Reading and Analyzing Mass Spectrometric Search Results
| aaMassesFun | test dummy |
| AminoAcids | Data frame with amino acid masses |
| Annotate_annotateSpectrum | annotate spectrum |
| Annotate-class | A list with functions usefull for annotating peptide... |
| Annotate_isModification | compute which fragments carry modification |
| applyRTCalibrationModels | Apply Calibration models |
| Bibliospec_annotateDB | Annotate naked peptide seqeuences with protein IDs using... |
| Bibliospec_annotatePeaksWithFragments | Annotate the MS2 with fragment ion inforamtion, creates a new... |
| Bibliospec_annotatePrecursors | annotate precursors |
| Bibliospec-class | R access to Bibliospec File |
| Bibliospec_getAnnotationLists | get peptide anntotation list |
| Bibliospec_getScoreForPSM | Compute FDR and add it to RefSpectra Table |
| Bibliospec_getSpectraMetaWithAnnotation | get spectra table annotated with razor proteins |
| Blib-class | Blib class for generating blib files from dat and other id... |
| CiRTpeptides | Data frame with CiRTpeptides |
| getCalibrationModelsRT | Get Calibration models for spectrum |
| getTOPhit | For each precursor select top PSM |
| iRTpeptides | Data frame with iRTpeptides |
