Files in protViz/bibliospec
Reading and Analyzing Mass Spectrometric Search Results
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/FurtherAnalysis.R
R/annotate.Rxx
R/annotateClass.R
R/bibliospec.R
R/helperFunctions.R
R/setupBlibBuild.R
R/zzz.R
README.md
bibliospec.Rproj
data/AminoAcids.tab
data/CiRTpeptides.tab
data/iRTpeptides.tab
inst/Dockerfile
inst/NEWS.Rd
inst/benchmark/test.Rmd
inst/extdata/moreIRTpetpides/CiRT_ALL.TraML
inst/extdata/moreIRTpetpides/CiRT_SW.TraML
inst/extdata/moreIRTpetpides/mcp.O114.042267-2.txt
inst/extdata/moreIRTpetpides/mcp.O114.042267-3.zip
inst/extdata/moreIRTpetpides/mcp.O114.042267-4.zip
inst/extdata/peptideStd.sqlite
inst/extdata/uniprot.fasta.gz
inst/graphics/uml.png
man/AminoAcids.Rd
man/Annotate-class.Rd
man/Annotate_annotateSpectrum.Rd
man/Annotate_isModification.Rd
man/Bibliospec-class.Rd
man/Bibliospec_annotateDB.Rd
man/Bibliospec_annotatePeaksWithFragments.Rd
man/Bibliospec_annotatePrecursors.Rd
man/Bibliospec_getAnnotationLists.Rd
man/Bibliospec_getScoreForPSM.Rd
man/Bibliospec_getSpectraMetaWithAnnotation.Rd
man/Blib-class.Rd
man/CiRTpeptides.Rd
man/aaMassesFun.Rd
man/applyRTCalibrationModels.Rd
man/getCalibrationModelsRT.Rd
man/getTOPhit.Rd
man/iRTpeptides.Rd
src/findNN_.cpp
tests/testthat.R
tests/testthat/test-bibliospec.R
vignettes/BlibExample.Rmd
