API for protViz/fgcz.gsea.ora
ORA, sigORA and GSEA functionalities for proteomic data
| Global functions | |
|---|---|
| .apply_threshold | Source code |
| .get_species_mapping_AnnotationHub | Source code |
| .get_tables_KEGG | Source code |
| .get_tables_ractome_GO | Source code |
| .mergeR | Source code |
| .scriptCopyHelperVec | Source code |
| DT_makeURLfor | Man page Source code |
| GPStab | Man page |
| GSEA | Man page |
| checkIDmappingEfficiency | Man page Source code |
| copy_bfabric_2grpGSEA | Man page Source code |
| copy_bfabric_ClusterProfiler | Man page Source code |
| copy_gsea_report | Man page Source code |
| copy_multigroup_GSEA | Man page Source code |
| copy_ora_report | Man page Source code |
| cp_addurls_GO | Man page Source code |
| cp_clusterDPAEuclideanDist | Man page Source code |
| cp_clusterHClustEuclideanDist | Man page Source code |
| cp_clusterHClustEuclideanDistDeepslit | Man page Source code |
| cp_compClust | Man page Source code |
| cp_filterforNA | Man page Source code |
| dist_JK | Man page Source code |
| exampleContrastData | Man page |
| exampleUniprotIDs | Man page |
| fgsea_leading_edge_too_char | Man page Source code |
| fgsea_msigdb | Man page Source code |
| fgsea_msigdb_collections | Man page Source code |
| fgsea_rank | Man page Source code |
| fgsea_rank_contrasts | Man page Source code |
| getMsigdbGenesets | Man page Source code |
| get_UniprotID_from_fasta_header | Man page Source code |
| makeGPS_wrappR | Man page Source code |
| map_ids_2ways | Man page Source code |
| map_ids_annotationHub | Man page Source code |
| map_ids_uniprot | Man page Source code |
| mapthe | Man page Source code |
| myGPSrepo | Man page |
| plotK | Man page Source code |
| runSIGORA | Man page Source code |
| runWebGestaltGSEA | Man page Source code |
| runWebGestaltORA | Man page Source code |
| run_fgsea_for_allContrasts | Man page Source code |
| run_fgsea_for_allGeneSets | Man page Source code |
| sigoraWrappR | Man page Source code |
| sigora_example | Man page |
| sigora_upsetR | Man page Source code |
