get_UniprotID_from_fasta_header: Translate Fasta header to UniprotSwissprot ID
In protViz/fgcz.gsea.ora: ORA, sigORA and GSEA functionalities for proteomic data
Description
Usage
Arguments
Value
Examples
View source: R/getUniprotFromFastaHeader.R
Description
Translate Fasta header to UniprotSwissprot ID
Usage
1
get_UniprotID_from_fasta_header(df, idcolumn = "protein_Id")
Arguments
df
data.frame with FASTA headers in first column
idcolumn
Column name containing the IDs
Value
Returns the whole data.frame with a column called UniprotID containing UniprotSwissprot IDs instead of Fasta headers. This format is easier to use for subsequent ID mappings using the Annotationdbi package.
Examples
1
2
data("exampleContrastData", package = "prora")
get_UniprotID_from_fasta_header(exampleContrastData)
protViz/fgcz.gsea.ora documentation built on Dec. 24, 2021, 9:47 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/getUniprotFromFastaHeader.R
Description
Translate Fasta header to UniprotSwissprot ID
Usage
1 | get_UniprotID_from_fasta_header(df, idcolumn = "protein_Id")
|
Arguments
df |
|
idcolumn |
Column name containing the IDs |
Value
Returns the whole data.frame with a column called UniprotID containing UniprotSwissprot IDs instead of Fasta headers. This format is easier to use for subsequent ID mappings using the Annotationdbi package.
Examples
1 2 | data("exampleContrastData", package = "prora")
get_UniprotID_from_fasta_header(exampleContrastData)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.