fgsea_rank_contrasts: convert data frame into list of ranks
In protViz/fgcz.gsea.ora: ORA, sigORA and GSEA functionalities for proteomic data
Description
Usage
Arguments
See Also
Description
convert data frame into list of ranks
Usage
1
fgsea_rank_contrasts(df, ids = "X1", score = "X2", contrast = "contrast")
Arguments
df
data frame
ids
column with ids
score
column with scores
contrast
column with contrast name.
See Also
Other fgsea:
fgsea_leading_edge_too_char(),
fgsea_msigdb_collections(),
fgsea_msigdb(),
fgsea_rank(),
getMsigdbGenesets(),
run_fgsea_for_allContrasts(),
run_fgsea_for_allGeneSets()
protViz/fgcz.gsea.ora documentation built on Dec. 24, 2021, 9:47 a.m.
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Description Usage Arguments See Also
Description
convert data frame into list of ranks
Usage
1 | fgsea_rank_contrasts(df, ids = "X1", score = "X2", contrast = "contrast")
|
Arguments
df |
data frame |
ids |
column with ids |
score |
column with scores |
contrast |
column with contrast name. |
See Also
Other fgsea:
fgsea_leading_edge_too_char(),
fgsea_msigdb_collections(),
fgsea_msigdb(),
fgsea_rank(),
getMsigdbGenesets(),
run_fgsea_for_allContrasts(),
run_fgsea_for_allGeneSets()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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