makeGPS_wrappR: makeGPS Wrapper Function for generating background GPS...

Description Usage Arguments Value See Also Examples

View source: R/makeGPS_wrappR.R

Description

makeGPS Wrapper Function for generating background GPS repository for sigora and ora

Usage

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makeGPS_wrappR(ids, keytype = "UNIPROT", target = c("KEGG", "GO", "reactome"))

Arguments

ids

Character vector of gene symbols (experimental background)

keytype

default UNIPROT

target

Character, database to be used to generate GPS repository ("KEGG", "GO", "reactome")

Value

A GPS repository based on the self specified background in ids, see makeGPS for more information.

See Also

makeGPS

Examples

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data("exampleUniprotIDs", package = "prora")
myGPSrepo <- makeGPS_wrappR(ids = exampleUniprotIDs)
## Not run: 
myGPSrepo <- makeGPS_wrappR(ids = exampleUniprotIDs, target = "GO")
myGPSrepo <- makeGPS_wrappR(ids = exampleUniprotIDs, target = "react")

## End(Not run)

protViz/fgcz.gsea.ora documentation built on Dec. 24, 2021, 9:47 a.m.