makeGPS_wrappR: makeGPS Wrapper Function for generating background GPS...
In protViz/fgcz.gsea.ora: ORA, sigORA and GSEA functionalities for proteomic data

Description Usage Arguments Value See Also Examples

makeGPS Wrapper Function for generating background GPS repository for sigora and ora

1	makeGPS_wrappR(ids, keytype = "UNIPROT", target = c("KEGG", "GO", "reactome"))

`ids`	Character vector of gene symbols (experimental background)
`keytype`	default UNIPROT
`target`	Character, database to be used to generate GPS repository ("KEGG", "GO", "reactome")

A GPS repository based on the self specified background in ids, see makeGPS for more information.

makeGPS

data("exampleUniprotIDs", package = "prora")
myGPSrepo <- makeGPS_wrappR(ids = exampleUniprotIDs)
## Not run: 
myGPSrepo <- makeGPS_wrappR(ids = exampleUniprotIDs, target = "GO")
myGPSrepo <- makeGPS_wrappR(ids = exampleUniprotIDs, target = "react")

## End(Not run)