cp_addurls_GO: add uris to to cp table outputs

In protViz/fgcz.gsea.ora: ORA, sigORA and GSEA functionalities for proteomic data

Description

add uris to to cp table outputs

Usage

cp_addurls_GO(
  data,
  caption,
  coreEnrichment = "core_enrichment",
  signif2 = c("NES", "pvalue", "FDR"),
  gocarts = "http://amigo.geneontology.org/amigo/term/",
  genecarts = "https://www.ncbi.nlm.nih.gov/gene/"
)

Arguments

data	dataframe
caption	table caption
coreEnrichment	column with core enrichments
signif2	which columns contains digits to round to significance 2.
gocarts	default http://amigo.geneontology.org/amigo/term/
genecarts	default https://www.ncbi.nlm.nih.gov/gene/

See Also

Other clusterProfiler: cp_clusterDPAEuclideanDist(), cp_clusterHClustEuclideanDistDeepslit(), cp_clusterHClustEuclideanDist(), cp_compClust(), cp_filterforNA()

protViz/fgcz.gsea.ora documentation built on Dec. 24, 2021, 9:47 a.m.