checkIDmappingEfficiency: Checks mapping efficiency for IDs on the most commonly used...

Description Usage Arguments Value Examples

View source: R/checkIDmappingEfficiency.R

Description

Checks mapping efficiency for IDs on the most commonly used ID types

Usage

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checkIDmappingEfficiency(IDs, keytype, db = org.Hs.eg.db)

Arguments

IDs

character vector of IDs

keytype

corresponding keytype

db

database object, default org.Hs.eg.db

Value

Returns a data.frame containing information of mapping efficiency on GO, ENTREZ and KEGG IDs

Examples

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library(org.Hs.eg.db)
data("exampleContrastData", package = "prora")
df <- get_UniprotID_from_fasta_header(exampleContrastData)
checkIDmappingEfficiency(df$UniprotID, keytype = "UNIPROT")

protViz/fgcz.gsea.ora documentation built on Dec. 24, 2021, 9:47 a.m.