checkIDmappingEfficiency: Checks mapping efficiency for IDs on the most commonly used...
In protViz/fgcz.gsea.ora: ORA, sigORA and GSEA functionalities for proteomic data
Description
Usage
Arguments
Value
Examples
View source: R/checkIDmappingEfficiency.R
Description
Checks mapping efficiency for IDs on the most commonly used ID types
Usage
1
checkIDmappingEfficiency(IDs, keytype, db = org.Hs.eg.db)
Arguments
IDs
character vector of IDs
keytype
corresponding keytype
db
database object, default org.Hs.eg.db
Value
Returns a data.frame containing information of mapping efficiency on GO, ENTREZ and KEGG IDs
Examples
1
2
3
4
library(org.Hs.eg.db)
data("exampleContrastData", package = "prora")
df <- get_UniprotID_from_fasta_header(exampleContrastData)
checkIDmappingEfficiency(df$UniprotID, keytype = "UNIPROT")
protViz/fgcz.gsea.ora documentation built on Dec. 24, 2021, 9:47 a.m.
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Description Usage Arguments Value Examples
View source: R/checkIDmappingEfficiency.R
Description
Checks mapping efficiency for IDs on the most commonly used ID types
Usage
1 | checkIDmappingEfficiency(IDs, keytype, db = org.Hs.eg.db)
|
Arguments
IDs |
character vector of IDs |
keytype |
corresponding keytype |
db |
database object, default org.Hs.eg.db |
Value
Returns a data.frame containing information of mapping efficiency on GO, ENTREZ and KEGG IDs
Examples
1 2 3 4 | library(org.Hs.eg.db)
data("exampleContrastData", package = "prora")
df <- get_UniprotID_from_fasta_header(exampleContrastData)
checkIDmappingEfficiency(df$UniprotID, keytype = "UNIPROT")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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