fgsea_rank: get fgsea compatible rank list from data.frame
In protViz/fgcz.gsea.ora: ORA, sigORA and GSEA functionalities for proteomic data
Description
Usage
Arguments
See Also
Description
get fgsea compatible rank list from data.frame
Usage
1
fgsea_rank(df, ids = "X1", score = "X2")
Arguments
df
data frame
ids
column with ids
score
column with scores
See Also
Other fgsea:
fgsea_leading_edge_too_char(),
fgsea_msigdb_collections(),
fgsea_msigdb(),
fgsea_rank_contrasts(),
getMsigdbGenesets(),
run_fgsea_for_allContrasts(),
run_fgsea_for_allGeneSets()
protViz/fgcz.gsea.ora documentation built on Dec. 24, 2021, 9:47 a.m.
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Description Usage Arguments See Also
Description
get fgsea compatible rank list from data.frame
Usage
1 | fgsea_rank(df, ids = "X1", score = "X2")
|
Arguments
df |
data frame |
ids |
column with ids |
score |
column with scores |
See Also
Other fgsea:
fgsea_leading_edge_too_char(),
fgsea_msigdb_collections(),
fgsea_msigdb(),
fgsea_rank_contrasts(),
getMsigdbGenesets(),
run_fgsea_for_allContrasts(),
run_fgsea_for_allGeneSets()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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