fgsea_msigdb_collections: retrieve several msigdbr collections as fgsea compatible...
In protViz/prora: ORA, sigORA and GSEA functionalities for proteomic data
Description
Usage
Arguments
Value
See Also
Description
retrieve several msigdbr collections as fgsea compatible lists
Usage
1
fgsea_msigdb_collections(msigCollection, species = "Homo sapiens")
Arguments
msigCollection
msigdb collection
species
species default "Homo sapiens"
Value
list of colletions
See Also
Other fgsea:
fgsea_leading_edge_too_char(),
fgsea_msigdb(),
fgsea_rank_contrasts(),
fgsea_rank(),
getMsigdbGenesets(),
run_fgsea_for_allContrasts(),
run_fgsea_for_allGeneSets()
protViz/prora documentation built on Dec. 12, 2021, 12:32 a.m.
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Description Usage Arguments Value See Also
Description
retrieve several msigdbr collections as fgsea compatible lists
Usage
1 | fgsea_msigdb_collections(msigCollection, species = "Homo sapiens")
|
Arguments
msigCollection |
msigdb collection |
species |
species default "Homo sapiens" |
Value
list of colletions
See Also
Other fgsea:
fgsea_leading_edge_too_char(),
fgsea_msigdb(),
fgsea_rank_contrasts(),
fgsea_rank(),
getMsigdbGenesets(),
run_fgsea_for_allContrasts(),
run_fgsea_for_allGeneSets()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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