run_fgsea_for_allGeneSets: used to analyse a single contrast with various genesets
In protViz/prora: ORA, sigORA and GSEA functionalities for proteomic data
Description
Usage
Arguments
See Also
Description
used to analyse a single contrast with various genesets
Usage
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run_fgsea_for_allGeneSets(
allrnk,
geneSets,
nperm = 10000,
minSize = 25,
maxSize = 500
)
Arguments
allrnk
ranklist
geneSets
list of gene sets
nperm
number of permutations
minSize
minimum geneset size
maxSize
maximum geneset size
See Also
Other fgsea:
fgsea_leading_edge_too_char(),
fgsea_msigdb_collections(),
fgsea_msigdb(),
fgsea_rank_contrasts(),
fgsea_rank(),
getMsigdbGenesets(),
run_fgsea_for_allContrasts()
protViz/prora documentation built on Dec. 12, 2021, 12:32 a.m.
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Description Usage Arguments See Also
Description
used to analyse a single contrast with various genesets
Usage
1 2 3 4 5 6 7 | run_fgsea_for_allGeneSets(
allrnk,
geneSets,
nperm = 10000,
minSize = 25,
maxSize = 500
)
|
Arguments
allrnk |
ranklist |
geneSets |
list of gene sets |
nperm |
number of permutations |
minSize |
minimum geneset size |
maxSize |
maximum geneset size |
See Also
Other fgsea:
fgsea_leading_edge_too_char(),
fgsea_msigdb_collections(),
fgsea_msigdb(),
fgsea_rank_contrasts(),
fgsea_rank(),
getMsigdbGenesets(),
run_fgsea_for_allContrasts()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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