run_fgsea_for_allGeneSets: used to analyse a single contrast with various genesets

Description Usage Arguments See Also

View source: R/fgsea_utils.R

Description

used to analyse a single contrast with various genesets

Usage

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run_fgsea_for_allGeneSets(
  allrnk,
  geneSets,
  nperm = 10000,
  minSize = 25,
  maxSize = 500
)

Arguments

allrnk

ranklist

geneSets

list of gene sets

nperm

number of permutations

minSize

minimum geneset size

maxSize

maximum geneset size

See Also

Other fgsea: fgsea_leading_edge_too_char(), fgsea_msigdb_collections(), fgsea_msigdb(), fgsea_rank_contrasts(), fgsea_rank(), getMsigdbGenesets(), run_fgsea_for_allContrasts()


protViz/prora documentation built on Dec. 12, 2021, 12:32 a.m.