map_ids_uniprot: map_ids_uniprot

In protViz/prora: ORA, sigORA and GSEA functionalities for proteomic data

Description

Access to uniprot web API. For more detail see https://www.uniprot.org/help/uploadlists

Usage

map_ids_uniprot(
  data,
  ID_col = "UniprotID",
  from = "ACC+ID",
  to = "P_ENTREZGENEID",
  format = "tab"
)

Arguments

data	data
ID_col	column name containing id's
from	id type
to	id type
format	in which format to return the mapping

See Also

Other id_mapping: map_ids_2ways(), map_ids_annotationHub(), mapthe()

Examples

library(tidyverse)
fc_estimates <- prora::exampleContrastData

filtered_dd <- get_UniprotID_from_fasta_header(fc_estimates, idcolumn = "protein_Id")
# debug(map_ids_uniprot)
map_ids_uniprot( filtered_dd )

protViz/prora documentation built on Dec. 12, 2021, 12:32 a.m.