makeGPS_wrappR: makeGPS Wrapper Function for generating background GPS...

In protViz/prora: ORA, sigORA and GSEA functionalities for proteomic data

Description

makeGPS Wrapper Function for generating background GPS repository for sigora and ora

Usage

makeGPS_wrappR(ids, keytype = "UNIPROT", target = c("KEGG", "GO", "reactome"))

Arguments

ids	Character vector of gene symbols (experimental background)
keytype	default UNIPROT
target	Character, database to be used to generate GPS repository ("KEGG", "GO", "reactome")

Value

A GPS repository based on the self specified background in ids, see makeGPS for more information.

See Also

makeGPS

Examples

data("exampleUniprotIDs", package = "prora")
myGPSrepo <- makeGPS_wrappR(ids = exampleUniprotIDs)
## Not run: 
myGPSrepo <- makeGPS_wrappR(ids = exampleUniprotIDs, target = "GO")
myGPSrepo <- makeGPS_wrappR(ids = exampleUniprotIDs, target = "react")

## End(Not run)

protViz/prora documentation built on Dec. 12, 2021, 12:32 a.m.