sigora_upsetR: UpSetR wrapper for sigora results

In protViz/prora: ORA, sigORA and GSEA functionalities for proteomic data

Description

UpSetR wrapper for sigora results

Usage

sigora_upsetR(sigora_res, GPStable, ...)

Arguments

sigora_res	Object returned by the sigoraWrappR function
GPStable	Object returned by makeGPS_wrappR function, setting dev=TRUE
...	other parameters to upset

Examples

sigora_res <- prora::sigora_example
GPStable <- prora::GPStab

sigora_upsetR(sigora_res, GPStable)


df <- get_UniprotID_from_fasta_header(prora::exampleContrastData)
myGPSrepo <- makeGPS_wrappR(ids = df$UniprotID)
names(myGPSrepo)
res <- sigoraWrappR(df,score_col = "estimate", GPSrepos = myGPSrepo$gps,
                     threshold = 0.5)
sigora_upsetR(res, myGPSrepo$gpsTable)

protViz/prora documentation built on Dec. 12, 2021, 12:32 a.m.