compute_CM: Compute CM value for target candidate.

In ptrcksn/BINDER: BayesIan gene regulatory Networks inferreD via gene coExpression and compaRative genomics

Description

Compute CM value for target candidate.

Usage

compute_CM(target_candidate, target_candidates, ME_module, coexpression,
  o = NULL, threshold = "auto")

Arguments

target_candidate	Target candidate for which CM value is computed.
target_candidates	Character vector containing all target candidates for regulator.
ME_module	Character vector comprising all target candidates with a high affinity for regulator motif.
coexpression	Numerical symmetric matrix providing gene coexpression values.
o	Character vector comprising names of genes which should not be included in the computation of CM for target_candidate.
threshold	Numerical cutoff point: any values above threshold are considered to form a coexpression module with target_candidate; defaults to "auto" which represents the 95th percentile of coexpression scores involving target_candidate.

Value

CM value for target_candidate.

ptrcksn/BINDER documentation built on Nov. 5, 2019, 1:56 a.m.