compute_CPs: Compute CP values for all target candidates.

In ptrcksn/BINDER: BayesIan gene regulatory Networks inferreD via gene coExpression and compaRative genomics

Description

Compute CP values for all target candidates.

Usage

compute_CPs(target_candidates, PE_module, ortholog_module, coexpression,
  O = NULL, threshold = "auto")

Arguments

target_candidates	Character vector containing all target candidates for regulator.
PE_module	Character vector comprising all target candidates with precedent orthologous interaction with regulator.
coexpression	Numerical symmetric matrix providing gene coexpression values.
O	Named list where each name is a target candidate and each element is a character vector comprising names of genes that should not be included in the computation of CP for the corresponding target candidate name; by default only autocoexpression is excluded.
threshold	Numerical cutoff point: any values above threshold are considered to form a coexpression module with target_candidate; defaults to "auto" which represents the 95th percentile of coexpression scores involving target_candidate.

Value

Numerical vector containing CP values for target_candidates.

ptrcksn/BINDER documentation built on Nov. 5, 2019, 1:56 a.m.