prepare_data: Prepare data for use in BINDER model.

In ptrcksn/BINDER: BayesIan gene regulatory Networks inferreD via gene coExpression and compaRative genomics

Description

Prepare data for use in BINDER model.

Usage

prepare_data(proxy_structure)

Arguments

proxy_structure

Data frame returned by build_proxy_structure implementing augmented structure comprising columns: regulator, target_candidate, ortholog_module_status (1 if orthologous, 0 otherwise), ME (1 if high affinity for regulator motif, 0 otherwise), PE (1 if orthologous interaction, 0 otherwise), CM and CP.

Value

List comprising regulator, target_candidate, N (number of regulator-target observations), K (number of variables in the auxiliary stratum := 2 (i.e. ME and PE)), M (number of variables in the primary stratum := 2 (i.e. CM and CP)), X (matrix comprising the variables in the auxiliary stratum (ME, PE)), Y (matrix comprising the variables in the primary stratum (CM, CP)).

ptrcksn/BINDER documentation built on Nov. 5, 2019, 1:56 a.m.