compute_CP: Compute CP value for target candidate.

In ptrcksn/BINDER: BayesIan gene regulatory Networks inferreD via gene coExpression and compaRative genomics

Description

Compute CP value for target candidate.

Usage

compute_CP(target_candidate, target_candidates, PE_module, ortholog_module,
  coexpression, o = NULL, threshold = "auto")

Arguments

target_candidate	Target candidate for which CP value is computed.
target_candidates	Character vector containing all target candidates for regulator.
PE_module	Character vector comprising all target candidates with precedent orthologous interaction with regulator.
ortholog_module	Character vector comprising all orthologous target candidates.
coexpression	Numerical symmetric matrix providing gene coexpression values.
o	Character vector comprising names of genes which should not be included in the computation of CP for target_candidate.
threshold	Numerical cutoff point: any values above threshold are considered to form a coexpression module with target_candidate; defaults to "auto" which represents the 95th percentile of coexpression scores involving target_candidate.

Value

CP value for target_candidate.

ptrcksn/BINDER documentation built on Nov. 5, 2019, 1:56 a.m.