find_coexpression_module: Generate coexpression module for target candidate.

In ptrcksn/BINDER: BayesIan gene regulatory Networks inferreD via gene coExpression and compaRative genomics

Description

Generate coexpression module for target candidate.

Usage

find_coexpression_module(target_candidate, coexpression, o = NULL,
  threshold = "auto")

Arguments

target_candidate	Target candidate for which coexpression module is generated.
coexpression	Numerical symmetric matrix providing gene coexpression values.
o	Character vector comprising names of genes which should not be included in the computation of CM and CP for target_candidate.
threshold	Numerical cutoff point: any values above threshold are considered to form a coexpression module with target_candidate; defaults to "auto" which represents the 95th percentile of coexpression scores involving target_candidate.

Value

Character vector containing genes sharing a coexpression with target_candidate greater than threshold.

ptrcksn/BINDER documentation built on Nov. 5, 2019, 1:56 a.m.