Files in qenvio/dryhic
Some Functions to Handle HiC Data
.Rbuildignore
.gitignore
CHANGELOG.md
DESCRIPTION
NAMESPACE
R/ICE.R
R/Viterbi.R
R/correct_mat_from_b.R
R/evec_dist.R
R/first_max.R
R/first_min.R
R/fitcnv.R
R/get_contacts_matrix.R
R/get_contacts_per_bin.R
R/get_distance_decay.R
R/get_expected_matrix.R
R/kr_sparse.R
R/laplacian_matrix.R
R/logfinite.R
R/logpseudo.R
R/make_bins.R
R/mat2df.R
R/oned.R
R/paste_matrices.R
R/plot_matrix.R
R/reduce_resolution.R
R/reproducibility_score.R
R/scc.R
R/subsample_matrix.R
R/subset_matrix.R
R/symmetrize_matrix.R
R/upper_tri.R
README.md
cn.png
ice.png
inst/src/bam_to_4c.sh
inst/src/bam_to_bin.sh
inst/src/bam_to_mat.sh
inst/src/bam_to_mat_whole.sh
inst/src/cpickle2tsv.py
inst/src/prepare_bias_from_scratch.r
inst/src/reads_to_bins.awk
inst/src/reads_to_bins_whole.awk
inst/src/tsv2cpickle.py
man/ICE.Rd
man/correct_mat_from_b.Rd
man/evec_dist.Rd
man/first_max.Rd
man/first_min.Rd
man/fitcnv.Rd
man/get_contacts_matrix.Rd
man/get_contacts_per_bin.Rd
man/get_distance_decay.Rd
man/get_expected_matrix.Rd
man/kr_sparse.Rd
man/laplacian_matrix.Rd
man/logfinite.Rd
man/logpseudo.Rd
man/make_bins.Rd
man/mat2df.Rd
man/oned.Rd
man/paste_matrices.Rd
man/plot_matrix.Rd
man/reduce_resolution.Rd
man/reproducibility_score.Rd
man/scc.Rd
man/subsample_matrix.Rd
man/subset_matrix.Rd
man/symmetrize_matrix.Rd
man/upper_tri.Rd
oned.png
raw.png
src/dryhic.so
src/fwdb.f
src/fwdb.o
src/viterbi.f
src/viterbi.o
