kr_sparse: Perform the Knight-Ruiz normalization.
In qenvio/dryhic: Some Functions to Handle HiC Data
Description
Usage
Arguments
Details
Value
References
Examples
Description
This function takes a contact matrix and returns its KR normalized version.
Usage
1
kr_sparse(A)
Arguments
A
A dgTMatrix of contacts with genomic bins as row.names.
Details
This is a re-implementation of https://github.com/dozmorovlab/HiCcompare/blob/master/R/KRnormalization.R using sparse matrices.
Value
A A dgTMatrix of normalized contacts.
References
https://doi.org/10.1093/imanum/drs019
Examples
1
plot(0)
qenvio/dryhic documentation built on March 17, 2020, 8:37 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value References Examples
Description
This function takes a contact matrix and returns its KR normalized version.
Usage
1 | kr_sparse(A)
|
Arguments
A |
A |
Details
This is a re-implementation of https://github.com/dozmorovlab/HiCcompare/blob/master/R/KRnormalization.R using sparse matrices.
Value
A A dgTMatrix of normalized contacts.
References
https://doi.org/10.1093/imanum/drs019
Examples
1 | plot(0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.