fitcnv: Estimate copy number
In qenvio/dryhic: Some Functions to Handle HiC Data
Description
Usage
Arguments
Value
Examples
Description
This function takes a vector with the total number of contacts per bin and estimates the copy number
Usage
1
fitcnv(x)
Arguments
x
A vector of total contacts per bin. It should be ordered (at least inside each chromosome).
Value
A list with two elements. The first one refers to the average number of counts corresponding to a copy number of two. The second one is a vector of the same length as x with the estimated copy number.
Examples
1
plot(0)
qenvio/dryhic documentation built on March 17, 2020, 8:37 p.m.
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Description Usage Arguments Value Examples
Description
This function takes a vector with the total number of contacts per bin and estimates the copy number
Usage
1 | fitcnv(x)
|
Arguments
x |
A vector of total contacts per bin. It should be ordered (at least inside each chromosome). |
Value
A list with two elements. The first one refers to the average number of counts corresponding to a copy number of two. The second one is a vector of the same length as x with the estimated copy number.
Examples
1 | plot(0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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