Description Usage Arguments Details Value References Examples

This function takes a couple of contact matrices and computes the reproducibility score.

1 | ```
scc(mat1, mat2, mm, resol)
``` |

`mat1` |
A |

`mat2` |
Another |

`mm` |
The maximum distance (in bp) to truncate the data. |

`resol` |
The matrix resolution (bin size). |

Please note that mat1 and mat2 are expected to be a matrices of one chromosome (you could obtain them using `subset_matrix`

).

A list with the estimated SCC and associated std.

https://doi.org/10.1101/101386

1 | ```
plot(0)
``` |

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