scc: Compute the stratum adjusted correlation coefficient (SCC)...

In qenvio/dryhic: Some Functions to Handle HiC Data

Description

This function takes a couple of contact matrices and computes the reproducibility score.

Usage

scc(mat1, mat2, mm, resol)

Arguments

mat1	A dgTMatrix of contacts with genomic bins as row.names.
mat2	Another dgTMatrix of contacts with genomic bins as row.names.
mm	The maximum distance (in bp) to truncate the data.
resol	The matrix resolution (bin size).

Details

Please note that mat1 and mat2 are expected to be a matrices of one chromosome (you could obtain them using subset_matrix).

Value

A list with the estimated SCC and associated std.

References

https://doi.org/10.1101/101386

Examples

plot(0)

qenvio/dryhic documentation built on March 17, 2020, 8:37 p.m.