scc: Compute the stratum adjusted correlation coefficient (SCC)...

Description Usage Arguments Details Value References Examples

View source: R/scc.R

Description

This function takes a couple of contact matrices and computes the reproducibility score.

Usage

1
scc(mat1, mat2, mm, resol)

Arguments

mat1

A dgTMatrix of contacts with genomic bins as row.names.

mat2

Another dgTMatrix of contacts with genomic bins as row.names.

mm

The maximum distance (in bp) to truncate the data.

resol

The matrix resolution (bin size).

Details

Please note that mat1 and mat2 are expected to be a matrices of one chromosome (you could obtain them using subset_matrix).

Value

A list with the estimated SCC and associated std.

References

https://doi.org/10.1101/101386

Examples

1
plot(0)

qenvio/dryhic documentation built on May 26, 2019, 11:35 a.m.