reproducibility_score: Compute the reproducibility score between two contact...

Description Usage Arguments Details Value References Examples

View source: R/reproducibility_score.R

Description

This function takes a couple of contact matrices and computes the reproducibility score.

Usage

1
reproducibility_score(mat1, mat2, r = 20, mipr = 5, na.rm = TRUE)

Arguments

mat1

A dgTMatrix of contacts with genomic bins as row.names.

mat2

Another dgTMatrix of contacts with genomic bins as row.names.

r

The number of componentes used in the comparison.

mipr

Threshold for the j-inverse participation ratio (IPR).

na.rm

logical indicating if bins with NA should be removed.

Details

Please note that mat1 and mat2 are expected to be a matrices of one chromosome (you could obtain them using subset_matrix).

Value

The reproducibility score between two matrices.

References

https://doi.org/10.1093/bioinformatics/btx152

Examples

1
plot(0)

qenvio/dryhic documentation built on Nov. 5, 2018, 9:43 p.m.