Description Usage Arguments Details Value References Examples
View source: R/reproducibility_score.R
This function takes a couple of contact matrices and computes the reproducibility score.
1  reproducibility_score(mat1, mat2, r = 20, mipr = 5, na.rm = TRUE)

mat1 
A 
mat2 
Another 
r 
The number of componentes used in the comparison. 
mipr 
Threshold for the jinverse participation ratio (IPR). 
na.rm 

Please note that mat1 and mat2 are expected to be a matrices of one chromosome (you could obtain them using subset_matrix
).
The reproducibility score between two matrices.
https://doi.org/10.1093/bioinformatics/btx152
1  plot(0)

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