get_expected_matrix: Compute expected matrix (by distance decay).

In qenvio/dryhic: Some Functions to Handle HiC Data

Description

This function takes a sparse matrix of contacts and data frame with the expected counts per distance and returns a expected matrix.

Usage

get_expected_matrix(mat, dd)

Arguments

mat	A dgTMatrix of contacts with genomic bins as row.names. Currently only one chromosome.
dd	A data.frame with two columns: d (distance in bp) and e (expected number of contacts.

Value

A dgTMatrix corresponding to expected counts.

Examples

plot(0)

qenvio/dryhic documentation built on March 17, 2020, 8:37 p.m.