calcSD_Splex: Calculates CV per TMT_Set and LCMS_injection

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Calculates CV per TMT_Set and LCMS_injection

Description

Calculates CV per TMT_Set and LCMS_injection

Usage

calcSD_Splex(df, id, type = "log2_R")

Arguments

df	The name of a primary data file. By default, it will be determined automatically after matching the types of data and analysis with an id among c("pep_seq", "pep_seq_mod", "prot_acc", "gene"). A primary file contains normalized peptide or protein data and is among c("Peptide.txt", "Peptide_pVal.txt", "Peptide_impNA_pVal.txt", "Protein.txt", "Protein_pVal.txt", "protein_impNA_pVal.txt"). For analyses require the fields of significance p-values, the df will be one of c("Peptide_pVal.txt", "Peptide_impNA_pVal.txt", "Protein_pVal.txt", "protein_impNA_pVal.txt").
id	Character string; one of pep_seq, pep_seq_mod, prot_acc and gene.
type	Character string; the type of data for SD calculations.

qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.