calc_pep_retsd | R Documentation |
Different charge states can have small differences in pep_apex_ret
,
e.g., due to the spikiness of peaks.
calc_pep_retsd(df, group_psm_by = "pep_seq_mod", use_unique = TRUE)
df |
A data frame. |
group_psm_by |
A character string specifying the method in PSM grouping.
At the |
use_unique |
Logical; if TRUE, filter data by uniqueness. |
Sets use_unique = TRUE
when used with normPSM where the same
group_psm_by
can be redundant by prot_acc
. Sets
use_unique = FALSE
when used with mergePep where the same
group_psm_by
from different samples and LCMS series are all taken into
account.
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