calclfqPepNums: Calculates log2FC of peptides based on LFQ intensity.
In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data
calclfqPepNums R Documentation
Calculates log2FC of peptides based on LFQ intensity.
Description
With LFQ, values of log2_R000 (...) and N_log2_R000 (...) in
df_num are not yet filled after spreadPepNums. This utility
calculates the ratio using the values of LFQ intensity.
Usage
calclfqPepNums(df, omit_single_lfq = FALSE)
Arguments
df
A data frame.
omit_single_lfq
Logical; if TRUE, omits LFQ entries with single
measured values across all samples. The default is FALSE.
Details
For SILAC, intensity of heave, light etc. have been spread into multiple
columns and thus the log2Ratios can be calculated like regular LFQ.
qzhang503/proteoQ documentation built on March 16, 2024, 5:27 a.m.
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| calclfqPepNums | R Documentation |
Calculates log2FC of peptides based on LFQ intensity.
Description
With LFQ, values of log2_R000 (...) and N_log2_R000 (...) in
df_num are not yet filled after spreadPepNums. This utility
calculates the ratio using the values of LFQ intensity.
Usage
calclfqPepNums(df, omit_single_lfq = FALSE)
Arguments
df |
A data frame. |
omit_single_lfq |
Logical; if TRUE, omits LFQ entries with single measured values across all samples. The default is FALSE. |
Details
For SILAC, intensity of heave, light etc. have been spread into multiple columns and thus the log2Ratios can be calculated like regular LFQ.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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