collapseSTY: Make MS1 S, T and Y matrices across adjacent scans

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Make MS1 S, T and Y matrices across adjacent scans

Description

Near identical to mzion:::collapse_mms1ints with three fields instead of two.

Usage

collapseSTY(
  xs = NULL,
  ys = NULL,
  zs = NULL,
  lwr = 10,
  step = 0.002,
  spc = 0,
  coll = TRUE,
  are_refs,
  are_smpls
)

Arguments

xs	Vectors of X (retention time) values in an ASCENDING order.
ys	Vectors of Y (intensity) values corresponding to xs.
zs	Vectors of Z (scan numbers) values corresponding to xs.
lwr	The lower (retention time) limit.
step	The bin size in converting numeric X values to integers.
spc	A species center.
coll	Logical; collapse adjacent columns or not.
are_refs	Logical; are references or not.
are_smpls	Logical; are samples or not.

qzhang503/proteoQ documentation built on April 13, 2025, 8:31 a.m.