dl_msig: Helper to download 'gmt'
In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data
dl_msig R Documentation
Helper to download 'gmt'
Description
Helper to download 'gmt'
Usage
dl_msig(
msig_url =
"https://data.broadinstitute.org/gsea-msigdb/msigdb/release/7.0/c2.all.v7.0.entrez.gmt",
db_path = "~/proteoQ/dbs/msig",
overwrite = FALSE
)
Arguments
msig_url
A URL to
MSig
. At the NULL default, a c2.all.v[...].entrez.gmt data will
be used for all species. A valid web address is required for a custom data
base. For simplicity, only files with entrez IDs will be handled;
files of c2.all.v[...].symbols.gmt will not be parsed.
db_path
Character string; the local path for database(s). The default
is "~/proteoQ/dbs/msig".
overwrite
Logical; if TRUE, overwrite the downloaded database(s). The
default is FALSE.
qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.
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| dl_msig | R Documentation |
Helper to download 'gmt'
Description
Helper to download 'gmt'
Usage
dl_msig(
msig_url =
"https://data.broadinstitute.org/gsea-msigdb/msigdb/release/7.0/c2.all.v7.0.entrez.gmt",
db_path = "~/proteoQ/dbs/msig",
overwrite = FALSE
)
Arguments
msig_url |
A URL to
MSig
. At the |
db_path |
Character string; the local path for database(s). The default
is |
overwrite |
Logical; if TRUE, overwrite the downloaded database(s). The default is FALSE. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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