dl_msig: Helper to download 'gmt'

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Helper to download 'gmt'

Description

Helper to download 'gmt'

Usage

dl_msig(
  msig_url =
    "https://data.broadinstitute.org/gsea-msigdb/msigdb/release/7.0/c2.all.v7.0.entrez.gmt",
  db_path = "~/proteoQ/dbs/msig",
  overwrite = FALSE
)

Arguments

msig_url	A URL to MSig . At the NULL default, a c2.all.v[...].entrez.gmt data will be used for all species. A valid web address is required for a custom data base. For simplicity, only files with entrez IDs will be handled; files of c2.all.v[...].symbols.gmt will not be parsed.
db_path	Character string; the local path for database(s). The default is "~/proteoQ/dbs/msig".
overwrite	Logical; if TRUE, overwrite the downloaded database(s). The default is FALSE.

qzhang503/proteoQ documentation built on March 16, 2024, 5:27 a.m.