find_fit_nms: Finds sample IDS for used in the current fitting.

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Finds sample IDS for used in the current fitting.

Description

Finds sample IDS for used in the current fitting.

Usage

find_fit_nms(universe, selected, pat = NULL)

Arguments

universe	A name list from data table.
selected	A name list from metadata.
pat	A pattern in regular expression.

Examples

pat <- "^N_log2_R[0-9]{3}[NC]{0,1}\\s+\\("

# special character of "+" and pointed brackets
universe <- c("N_log2_R000 (<Mix1+Mix2> [base])", "N_log2_R000 (Mix1 [heavy])", 
              "N_log2_R000 (Mix2 [heavy])")
selected <- c("<Mix1+Mix2> [base]", "Mix2 [heavy]")

# special character of "+" and round parenthesis
universe <- c("N_log2_R000 ((Mix1+Mix2) [base])", "N_log2_R000 (Mix1 [heavy])", 
              "N_log2_R000 (Mix2 [heavy])")
selected <- c("(Mix1+Mix2) [base]", "Mix2 [heavy]")

qzhang503/proteoQ documentation built on March 16, 2024, 5:27 a.m.