find_n_comp: Checks 'n_comp'
In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data
find_n_comp R Documentation
Checks n_comp
Description
Checks n_comp
Usage
find_n_comp(df, n_comp = NULL, method_align = "MC")
Arguments
df
An input data frame
n_comp
Integer; the number of Gaussian components to be used with
method_align = MGKernel. A typical value is 2 or 3. The variable
n_comp overwrites the argument k in
normalmixEM.
method_align
Character string indicating the method in aligning
log2FC across samples. MC: median-centering; MGKernel:
the kernel density defined by multiple Gaussian functions
(normalmixEM). At the MC default, the ratio
profiles of each sample will be aligned in that the medians of the
log2FC are zero. At MGKernel, the ratio profiles of each
sample will be aligned in that the log2FC at the maximums of kernel
density are zero.
qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.
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| find_n_comp | R Documentation |
Checks n_comp
Description
Checks n_comp
Usage
find_n_comp(df, n_comp = NULL, method_align = "MC")
Arguments
df |
An input data frame |
n_comp |
Integer; the number of Gaussian components to be used with
|
method_align |
Character string indicating the method in aligning
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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