find_pep_pos: Finds peptide start and end positions
In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data
find_pep_pos R Documentation
Finds peptide start and end positions
Description
find_pep_pos finds the start and the end positions of peptides in
ascribed proteins description based on the fasta.
Usage
find_pep_pos(fasta_name, pep_seq, fasta)
Arguments
fasta_name
The fasta name
pep_seq
Peptide sequence
fasta
The database of fasta
Examples
fasta_name <- "NP_612429"
pep_seq <- "ADVSLPSMQGDLK"
fasta <- read_fasta("~/proteoQ/dbs/fasta/refseq/refseq_hs_2013_07.fasta")
x <- find_pep_pos(fasta_name, pep_seq, fasta)
pep_seq <- "ADVSLPSMQGDL"
x <- find_pep_pos(fasta_name, pep_seq, fasta)
qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.
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| find_pep_pos | R Documentation |
Finds peptide start and end positions
Description
find_pep_pos finds the start and the end positions of peptides in
ascribed proteins description based on the fasta.
Usage
find_pep_pos(fasta_name, pep_seq, fasta)
Arguments
fasta_name |
The fasta name |
pep_seq |
Peptide sequence |
fasta |
The database of fasta |
Examples
fasta_name <- "NP_612429"
pep_seq <- "ADVSLPSMQGDLK"
fasta <- read_fasta("~/proteoQ/dbs/fasta/refseq/refseq_hs_2013_07.fasta")
x <- find_pep_pos(fasta_name, pep_seq, fasta)
pep_seq <- "ADVSLPSMQGDL"
x <- find_pep_pos(fasta_name, pep_seq, fasta)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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