find_shared_prots: Finds peptides that are shared by proteins.
In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data
find_shared_prots R Documentation
Finds peptides that are shared by proteins.
Description
Only for PSM tables where the same pep_seq duplicated in rows with
different prot_acc's . This for now means Mascot with same-set and
sub-set proteins enabled. Otherwise, e.g. when applying to other search
engines without such redundancy, every peptide would turn out to be unique.
Usage
find_shared_prots(df = NULL, pep_id = "pep_seq", prot_id = "prot_acc")
Arguments
df
PSM data.
pep_id
the column key of peptide sequences.
prot_id
The column key of protein accessions.
Details
Output rows are unique at the levels of c("prot_acc", "pep_seq"). By
default, sequences of Protein terminals will be treated separately.
qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.
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| find_shared_prots | R Documentation |
Finds peptides that are shared by proteins.
Description
Only for PSM tables where the same pep_seq duplicated in rows with
different prot_acc's . This for now means Mascot with same-set and
sub-set proteins enabled. Otherwise, e.g. when applying to other search
engines without such redundancy, every peptide would turn out to be unique.
Usage
find_shared_prots(df = NULL, pep_id = "pep_seq", prot_id = "prot_acc")
Arguments
df |
PSM data. |
pep_id |
the column key of peptide sequences. |
prot_id |
The column key of protein accessions. |
Details
Output rows are unique at the levels of c("prot_acc", "pep_seq"). By
default, sequences of Protein terminals will be treated separately.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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