find_species_centers2: Finds the data center of log2FC by species and samples

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Finds the data center of log2FC by species and samples

Description

Input matrix: columns, peptides; rows, samples.

Usage

find_species_centers2(
  ymat,
  are_refs = NULL,
  are_smpls = NULL,
  sps,
  new_na_species = ".other",
  na_species_by_pri = FALSE
)

Arguments

ymat	An intensity matrix.
are_refs	A logical vector indicating reference status.
are_smpls	A logical vector indicating reference status.
sps	The species values corresponding the column peptides.
new_na_species	A replace value for NA species.
na_species_by_pri	Logical; if TRUE, use the center of the primary species for NA species.

qzhang503/proteoQ documentation built on Feb. 27, 2025, 8:34 a.m.