geom_lower_text: Geom plot for ggpairs

View source: R/mds.R

geom_lower_textR Documentation

Geom plot for ggpairs

Description

Geom plot for ggpairs

Usage

geom_lower_text(data, mapping, params, show_ids, ...)

Arguments

data

Input data.

mapping

The mapping for ggplot2.

params

Additional parameters for geom_point.

show_ids

Logical; if TRUE, shows the sample IDs in MDS/PCA plots. The default is TRUE.

...

filter_: Variable argument statements for the row filtration against data in a primary file linked to df. See also normPSM for the format of filter_ statements.

Arguments passed to prcomp: rank., tol etc. At type = obs, argument scale becomes scale_features and center matches center_features. At type = feats, the setting of scale_log2r will be applied for data scaling and data centering be automated by standPep or standPrn.

Additional arguments for ggsave:
width, the width of plot;
height, the height of plot
...


qzhang503/proteoQ documentation built on March 16, 2024, 5:27 a.m.