gspa_colAnnot: Sets up the column annotation in heat maps

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Sets up the column annotation in heat maps

Description

Sets up the column annotation in heat maps

Usage

gspa_colAnnot(annot_cols = NULL, df, sample_ids, annot_colnames = NULL)

Arguments

annot_cols	A character vector of column keys in expt_smry.xlsx. The values under the selected keys will be used to color-code sample IDs on the top of the indicated plot. The default is NULL without column annotation.
df	The name of a primary data file. By default, it will be determined automatically after matching the types of data and analysis with an id among c("pep_seq", "pep_seq_mod", "prot_acc", "gene"). A primary file contains normalized peptide or protein data and is among c("Peptide.txt", "Peptide_pVal.txt", "Peptide_impNA_pVal.txt", "Protein.txt", "Protein_pVal.txt", "protein_impNA_pVal.txt"). For analyses require the fields of significance p-values, the df will be one of c("Peptide_pVal.txt", "Peptide_impNA_pVal.txt", "Protein_pVal.txt", "protein_impNA_pVal.txt").
sample_ids	A character vector containing the sample IDs for an ascribing analysis.
annot_colnames	A character vector of replacement name(s) to annot_cols. The default is NULL without name replacement.

qzhang503/proteoQ documentation built on March 16, 2024, 5:27 a.m.