hparse_fasta: Helper of parse_fasta by accession type.
In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

hparse_fasta

R Documentation

Helper of parse_fasta by accession type.

NA genes are replaced with prot_acc.

hparse_fasta(
  df_sub,
  fasta_db,
  pat_uni_acc,
  pat_uni_id,
  pat_ref_acc,
  fasta,
  warns
)

`df_sub`	An input data frame with a single type of protein accession.
`fasta_db`	FASTA databases
`pat_uni_acc`	Patterns of Uniprot accessions.
`pat_uni_id`	Pattern of Uniprot IDs.
`pat_ref_acc`	Patterns of RefSeq accessions.
`fasta`	Names of FASTA database.
`warns`	The type of warning.

qzhang503/proteoQ documentation built on Feb. 27, 2025, 8:34 a.m.

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README.md

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