lgl_cleanup: Updates data groups of 'log2_R_' and 'I_' etc. by logical...

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Updates data groups of 'log2_R_' and 'I_' etc. by logical matrix 'lgl_log2_...'.

Description

Updates data groups of 'log2_R_' and 'I_' etc. by logical matrix 'lgl_log2_...'.

Usage

lgl_cleanup(df, type = "sd", rm_allna = FALSE)

Arguments

df

The name of a primary data file. By default, it will be determined automatically after matching the types of data and analysis with an id among c("pep_seq", "pep_seq_mod", "prot_acc", "gene"). A primary file contains normalized peptide or protein data and is among c("Peptide.txt", "Peptide_pVal.txt", "Peptide_impNA_pVal.txt", "Protein.txt", "Protein_pVal.txt", "protein_impNA_pVal.txt"). For analyses require the fields of significance p-values, the df will be one of c("Peptide_pVal.txt", "Peptide_impNA_pVal.txt", "Protein_pVal.txt", "protein_impNA_pVal.txt").

type

Type of logical matrix.

qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.